Lmst

At #PAG33? Stop by the Galaxy booth to get snacks and talk with us about how we can help you get FREE, reproduceable, publishable high performance computing workflows. #Assembly, #Transcriptomics, #Epigenetics, and much more!

🧬✨ Reminder: Intro to Spatial #Transcriptomics Webinar!
Nov 20, 2025 · 13:00 CET · With @ghga Florian Heyl
Get started with image-based spatial omics & key preprocessing steps.
Free, in English—registration required! More information: https://www.denbi.de/de-nbi-events/1967-the-de-nbi-elixir-de-and-ghga-knowledge-series-image-based-spatial-transcriptomics-technologies
#SpatialOmics #Webinar

Is spatial transcriptomics data preprocessing giving you a headache? You're not alone! 🤯
Join our webinar designed for new researchers to simplify the complex world of image-based spatial omics. We'll walk through the practical workflow step-by-step, from initial cell segmentation to cleaning up your data.
Get the foundational skills you need. 📅 Sign up here: https://t1p.de/lqbg1

#Transcriptomics #SpatialTranscriptomics #Omics #DataScience #ResearchWebinar #GHGA #ELIXIR #deNBI

Digital announcement for the webinar series “The Knowledge Series – Empowering Research: Practical Bioinformatics and Data Management.” Date: November 20, 2025, 13:00 CET. Title of the webinar: “Beginners guide of data processing for image-based spatial transcriptomics technologies” with Florian Heyl. More information on GHGA and de.NBI websites.

Research Associate
University of Ottawa

See the full job description on jobRxiv: https://jobrxiv.org/job/university-of-ottawa-27778-research-associate-2/

#cellbiology #molecularbiology #transcriptomics #ScienceJobs #hiring #research
https://jobrxiv.org/job/university-of-ottawa-27778-research-associate-2/?fsp_sid=4260

Our review article got published in 'Biotechnology Advances':

"Decoding bioprocesses with transcriptomics: current status and future potential"
https://doi.org/10.1016/j.biotechadv.2025.108736

#Biotech #ScaleUp #ScaleDown #Transcriptomics
@PuckerLab

The Galaxy single-cell and spatial omics community (SPOC) is thrilled to share the latest updates on tools, datasets, and collaborative initiatives driving open and reproducible single-cell and spatial omics research in 2025.
https://galaxyproject.org/news/2025-10-14-spoc-cellgenomics/

@galaxyfreiburg
#UseGalaxy #GalaxyProject #EOSC #SingleCell #SpatialOmics #Omics #Transcriptomics #Bioinformatics #Genomics #ComputationalBiology #EuroScienceGateway #OpenScience #ReproducibleResearch #GalaxyCommunity #SPOC (1/2)

Galaxy single-cell and spatial omics graphical abstract

The Galaxy single-cell and spatial omics community (SPOC) is thrilled to share the latest updates on tools, datasets, and collaborative initiatives driving open and reproducible single-cell and spatial omics research in 2025.
https://galaxyproject.org/news/2025-10-14-spoc-cellgenomics/

@galaxyproject
#UseGalaxy #GalaxyProject #EOSC #UniFreiburg #SingleCell #SpatialOmics #Omics #Transcriptomics #Bioinformatics #Genomics #ComputationalBiology #EuroScienceGateway #OpenScience #ReproducibleResearch (1/2)

New algorithm address the challenge of inferring GRNs from time series transcriptome data. This approach generates cohesive networks with minimal user input, revealing biologically meaningful neighborhoods.
https://doi.org/10.1093/insilicoplants/diad018 #PlantBiology #Transcriptomics #GRN

Join our online course on Sex Chromosome Evolution (6–10 Oct) to gain hands-on experience in genomic and transcriptomic analyses.

https://www.physalia-courses.org/courses-workshops/sexchr/
#SexChromosomes #GenomeEvolution #Transcriptomics #ComparativeGenomics

🧬 Can a single method balance sensitivity and specificity in small RNA annotation across the tree of life?

🔗 Class-agnostic annotation of small RNAs balances sensitivity and specificity in diverse organisms. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.05.045

📚 CSBJ: https://www.csbj.org/

#RNA #Bioinformatics #Genomics #SmallRNAs #ComputationalBiology #Transcriptomics #MolecularBiology #Epigenetics

Class-agnostic annotation of small RNAs balances sensitivity and specificity in diverse organisms. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.05.045

New preprint, with a modest contribution from yours truly, on proteo-transcriptomic changes in the aging mammalian brain.

https://www.biorxiv.org/content/10.1101/2025.08.14.669896v1

#SystemsBiology #Proteomics #Transcriptomics #neuroscience

Postdoc Position: Evolution and Organization of Ant Olfactory Systems
Johannes Gutenberg University Mainz

PostDoc position @uni Mainz (Germany)
#genomics #transcriptomics to investigate the olfactory system of ants

See the full job description on jobRxiv: https://jobrxiv.org/job/johannes-gutenberg-university-mainz-27778-postdoc-position-evolu...
https://jobrxiv.org/job/johannes-gutenberg-university-mainz-27778-postdoc-position-evolution-and-organization-of-ant-olfactory-systems/?fsp_sid=550

My son, Ronan, who is double-majoring in #biochemistry and #physics, is working at Georgetown University in DC this summer, on a #cancer research internship. His work focuses on #cell-type #deconvolution in spatial #transcriptomics.

I know nothing about biology, but I am assisting him with deconvolution. My MathsTodon friends, have you any guidance to offer, either in mathematics or in biology?

🧬 Can advanced sequencing technologies bring clarity to genetic variants once deemed uncertain?

🔗 Combining long-read DNA and RNA sequencing to enhance molecular understanding of structural variations leading to copy gains. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.04.031

📚 CSBJ: https://www.csbj.org/

#Genomics #StructuralVariants #LongReadSequencing #RareDisease #PrecisionMedicine #RNAseq #Nanopore #GeneticDiagnostics #NanoporeSequencing #Transcriptomics

Combining long-read DNA and RNA sequencing to enhance molecular understanding of structural variations leading to copy gains. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.04.031

"Scalable image-based visualization and alignment of spatial transcriptomics datasets", by Preibisch et al. 2025 @preibischs
https://www.sciencedirect.com/science/article/pii/S2405471225000973
#transcriptomics #BioimageInformatics

🔬✨Zooming In—One Cell at a Time!

The 5th Danish #Single-Cell #Symposium is coming to #Copenhagen, and it's THE place to be if you’re into all things single-cell!

Topics will include:
Advances in single-cell #genomics and #transcriptomics
#Computational approaches to #dataanalysis
Applications in health and disease

🗓️May 15–16
📍Hosted at Panum, UCPH
💡Scientists, students, and techies are all welcome!

🔗 Check it out: https://events.au.dk/5thdanishsingle-cellsymposium

#SingleCell #ScienceInCopenhagen #LifeScience