Lmst

Thank you to @biocrusoe for the touching tribute to Peter Amstutz @tetron in the #BOSC2025 opening session - a very fitting venue as much of his work was with #CommonWL, which involved many of our community, and started at the #CoFest: https://floss.social/@cwl/114655254702456294

A little preview of this incredible project I've been working on with @wait_sasha
End to end preclinical #ai for #genomics using a #MiniPC, external #gpu, #arvados and a #commonwl #workflow to ask #llama 3.3 70B to help you understand your genome!

https://youtube.com/shorts/aeNOBV-ZVaw?si=UqUm6HFxK1r79iIi

#WorkflowDevMeetup

Next Month 11/13

83th Workflow Meetup
2024/11/13(Wed) 13:00 - 19:00 (JST)
Virtual Meetup (online)
第83回ワークフローミートアップ
開催お知らせ
今回は、完全オンラインで開催予定

https://github.com/workflow-meetup-jp/workflow-meetup/wiki/20241113

#commonwl #commonwljp #nextflow #usegalaxy #usegalaxyjp #commonwl

#CommonWL community members are participating in this week's DBCLS sponsored BioHackathon! #biohackjp

Some progress reports:

#CommonWL Conference Sessions 3 & 4 are successfully finished!

Thanks to our invited keynote speaker Ewe Deelman and all of our presenters and participants!

Screenshot of a Jitsi video conference embedded in an Element/Matrix chat labeled "CWL Conference". Many of the participants have their cameras turned on and their arms in the air, in celebration. One of the cameras shows an auditorium at VU Amsterdam where 17 people (all wearing FFP3 facemasks) are also celebrating with their arms in the air.

Invited keynote speaker, Ewa Deelman, stands behind a podium. Over her left shoulder is a large screen with the title slide labeled "The Pegasus Workflow Management System: Current Applications and Future Directions". The slide lists Dr. Deelman's affiliation: University of Southern California, School of Engineering; Information Sciences Institute. deelman@isi.edu
Her work is funded by NSF awards #2018074 and #1664162

CWL Working Groups

https://conf.tube/videos/watch/e5486560-f290-41d6-97ae-f594836f49ee

Session 2 of the CWL Conference 2024 starts in an hour!

Program: https://www.commonwl.org/conferences/2024/#onlinesession2Schedule

You can still sign up for free; we give you the connection information automatically: https://forms.gle/1q2q7t5vVVjUhGKR7

Can't attend Session 2, or did you miss Session 1? No worries, the videos are already online and linked from the program. Click through and you can also leave questions and comments for the presenters.

#CommonWL #SciWorkflows

Future Improvements to CWL

https://conf.tube/videos/watch/7cdc99b1-ece1-49f0-8ecc-c720f14eee57

Salad Goes Rusty: Expanding the Horizons of CWL

https://conf.tube/videos/watch/7c4f1522-bc40-4f4f-a339-39123ef979c3

Challenges and Requirements to Drive Workflows from the Data Plane

https://conf.tube/videos/watch/a48424c3-d8f0-4adc-9761-f718cdb6ee49

Advancing Workflow Automation: Insights from Workflow Execution Service and the Common Workflow Language

https://conf.tube/videos/watch/ed7bab35-1a16-45c7-8358-d3ab7c9f4dab

JSON Schemas for validating CWL and CWL Inputs

https://conf.tube/videos/watch/1ae180ab-a5c9-4e3b-aef8-7841f35253fc

Integrating Scientific Workflows into Services and Applications using CWL