Qing Nie
System learning of single cells

Fascinating talk about analyses of single cell data

Eg paper on angiogenesis in #elife
"Spatial–temporal order–disorder transition in angiogenic NOTCH signaling controls cell fate specification"
#ScRNA #cellchat #rna #notch #cellbiology

https://elifesciences.org/articles/89262
https://faculty.sites.uci.edu/qnie/

COMMOT, COMMunication analysis by Optimal Transport, a versatile tool infer cell–cell communication in #SpatialTranscriptomics 🤠

Compatible with #MERFISH #Visium seqFISH+ #STARmap

vs #CellChat #Giotto #CellPhoneDBv3

Dr. Qing Nie lab Nature Methods 2023
https://www.nature.com/articles/s41592-022-01728-4